PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G050200.1
Common NameB456_009G050200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 266aa    MW: 28839.3 Da    PI: 6.0314
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G050200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.95.8e-1968118155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  Gorai.009G050200.1  68 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDVAALSIKG 118
                         68*****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.5E-1368118IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-3269127IPR001471AP2/ERF domain
SMARTSM003801.4E-3769132IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-2169127IPR016177DNA-binding domain
PROSITE profilePS5103223.40669126IPR001471AP2/ERF domain
CDDcd000182.32E-3270128No hitNo description
PRINTSPR003672.9E-107081IPR001471AP2/ERF domain
PRINTSPR003672.9E-1092108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MTEQQNSETE CSSNSLSWPP RSPTSPASTH SPHPNSLPGS TTTLNGKPET TCDTNRKMKR  60
MRDSSKHPVY RGVRMRSWGK WVSEIREPRK KSRIWLGTFP TPEMAARAHD VAALSIKGNS  120
AILNFPELAN SLPRPVSLAP RDVQAAAAKA AQMGNLDSPS PSTTSSSSTS TLSSSSSLSS  180
LVSHLDLSSA SDELTEIVEL PSLGTSYESV ELGSEFIFAD SMDGWFYPPP WLESMEDCEY  240
VCNQLVVPES VLQNGFKQVL IMGKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1770131668ATERF1
3gcc_A4e-1770131668ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012447312.10.0PREDICTED: ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD32e-75DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A0D2Q9A20.0A0A0D2Q9A2_G
STRINGVIT_04s0008g03400.t014e-85(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.16e-69ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]